class: center, middle, inverse, title-slide # Neuropsychology ## Psychiatry Grand Rounds Nov 2021 ### Joey Trampush ### Second person ### USC Keck School of Medicine ### 2021-10-13 --- .bg-washed-green.b--dark-green.ba.bw2.br3.shadow-5.ph4.mt5[ The only way to write good code is to write tons of bad code first. Feeling shame about bad code stops you from getting to good code .tr[ — Hadley Wickham ]] --- name: colors ## Colors .left-column[ Text color [Link Color](#3) **Bold Color** _Italic Color_ `Inline Code` ] .right-column[ Lorem ipsum dolor sit amet, [consectetur adipiscing elit (link)](#3), sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Erat nam at lectus urna. Pellentesque elit ullamcorper **dignissim cras tincidunt (bold)** lobortis feugiat. _Eros donec ac odio tempor_ orci dapibus ultrices. Id porta nibh venenatis cras sed felis eget velit aliquet. Aliquam id diam maecenas ultricies mi. Enim sit amet `code_color("inline")` venenatis urna cursus eget nunc scelerisque viverra. ] --- # Big Topic or Inverse Slides `#` ## Slide Headings `##` ### Sub-slide Headings `###` #### Bold Call-Out `####` This is a normal paragraph text. Only use header levels 1-4. ##### Possible, but not recommended `#####` ###### Definitely don't use h6 `######` --- # Left-Column Headings .left-column[ ## First ## Second ## Third ] .right-column[ Dolor quis aptent mus a dictum ultricies egestas. Amet egestas neque tempor fermentum proin massa! Dolor elementum fermentum pharetra lectus arcu pulvinar. ] --- class: inverse center middle # Topic Changing Interstitial -- ``` class: inverse center middle ``` --- layout: true ## Blocks --- ### Blockquote > This is a blockquote following a header. > > When something is important enough, you do it even if the odds are not in your favor. --- ### Code Blocks #### R Code #### JavaScript ```js var fun = function lang(l) { dateformat.i18n = require('./lang/' + l) return true; } ``` --- ### More R Code --- ``` ## ✓ It worked! ``` -- ``` ## Just a friendly message ``` -- ``` ## Warning: This could be bad... ``` -- ``` ## Error in eval(expr, envir, enclos): I hope you're sitting down for this ``` --- layout: true ## Tables --- exclude: false ``` ## # A tibble: 32 × 11 ## mpg cyl disp hp drat wt qsec vs am gear carb ## <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> ## 1 21 6 160 110 3.9 2.62 16.5 0 1 4 4 ## 2 21 6 160 110 3.9 2.88 17.0 0 1 4 4 ## 3 22.8 4 108 93 3.85 2.32 18.6 1 1 4 1 ## 4 21.4 6 258 110 3.08 3.22 19.4 1 0 3 1 ## 5 18.7 8 360 175 3.15 3.44 17.0 0 0 3 2 ## 6 18.1 6 225 105 2.76 3.46 20.2 1 0 3 1 ## 7 14.3 8 360 245 3.21 3.57 15.8 0 0 3 4 ## 8 24.4 4 147. 62 3.69 3.19 20 1 0 4 2 ## 9 22.8 4 141. 95 3.92 3.15 22.9 1 0 4 2 ## 10 19.2 6 168. 123 3.92 3.44 18.3 1 0 4 4 ## # … with 22 more rows ``` --- <table> <thead> <tr> <th style="text-align:left;"> </th> <th style="text-align:right;"> mpg </th> <th style="text-align:right;"> cyl </th> <th style="text-align:right;"> disp </th> <th style="text-align:right;"> hp </th> <th style="text-align:right;"> drat </th> <th style="text-align:right;"> wt </th> <th style="text-align:right;"> qsec </th> <th style="text-align:right;"> vs </th> <th style="text-align:right;"> am </th> <th style="text-align:right;"> gear </th> <th style="text-align:right;"> carb </th> </tr> </thead> <tbody> <tr> <td style="text-align:left;"> Mazda RX4 </td> <td style="text-align:right;"> 21.0 </td> <td style="text-align:right;"> 6 </td> <td style="text-align:right;"> 160 </td> <td style="text-align:right;"> 110 </td> <td style="text-align:right;"> 3.90 </td> <td style="text-align:right;"> 2.620 </td> <td style="text-align:right;"> 16.46 </td> <td style="text-align:right;"> 0 </td> <td style="text-align:right;"> 1 </td> <td style="text-align:right;"> 4 </td> <td style="text-align:right;"> 4 </td> </tr> <tr> <td style="text-align:left;"> Mazda RX4 Wag </td> <td style="text-align:right;"> 21.0 </td> <td style="text-align:right;"> 6 </td> <td style="text-align:right;"> 160 </td> <td style="text-align:right;"> 110 </td> <td style="text-align:right;"> 3.90 </td> <td style="text-align:right;"> 2.875 </td> <td style="text-align:right;"> 17.02 </td> <td style="text-align:right;"> 0 </td> <td style="text-align:right;"> 1 </td> <td style="text-align:right;"> 4 </td> <td style="text-align:right;"> 4 </td> </tr> <tr> <td style="text-align:left;"> Datsun 710 </td> <td style="text-align:right;"> 22.8 </td> <td style="text-align:right;"> 4 </td> <td style="text-align:right;"> 108 </td> <td style="text-align:right;"> 93 </td> <td style="text-align:right;"> 3.85 </td> <td style="text-align:right;"> 2.320 </td> <td style="text-align:right;"> 18.61 </td> <td style="text-align:right;"> 1 </td> <td style="text-align:right;"> 1 </td> <td style="text-align:right;"> 4 </td> <td style="text-align:right;"> 1 </td> </tr> <tr> <td style="text-align:left;"> Hornet 4 Drive </td> <td style="text-align:right;"> 21.4 </td> <td style="text-align:right;"> 6 </td> <td style="text-align:right;"> 258 </td> <td style="text-align:right;"> 110 </td> <td style="text-align:right;"> 3.08 </td> <td style="text-align:right;"> 3.215 </td> <td style="text-align:right;"> 19.44 </td> <td style="text-align:right;"> 1 </td> <td style="text-align:right;"> 0 </td> <td style="text-align:right;"> 3 </td> <td style="text-align:right;"> 1 </td> </tr> <tr> <td style="text-align:left;"> Hornet Sportabout </td> <td style="text-align:right;"> 18.7 </td> <td style="text-align:right;"> 8 </td> <td style="text-align:right;"> 360 </td> <td style="text-align:right;"> 175 </td> <td style="text-align:right;"> 3.15 </td> <td style="text-align:right;"> 3.440 </td> <td style="text-align:right;"> 17.02 </td> <td style="text-align:right;"> 0 </td> <td style="text-align:right;"> 0 </td> <td style="text-align:right;"> 3 </td> <td style="text-align:right;"> 2 </td> </tr> <tr> <td style="text-align:left;"> Valiant </td> <td style="text-align:right;"> 18.1 </td> <td style="text-align:right;"> 6 </td> <td style="text-align:right;"> 225 </td> <td style="text-align:right;"> 105 </td> <td style="text-align:right;"> 2.76 </td> <td style="text-align:right;"> 3.460 </td> <td style="text-align:right;"> 20.22 </td> <td style="text-align:right;"> 1 </td> <td style="text-align:right;"> 0 </td> <td style="text-align:right;"> 3 </td> <td style="text-align:right;"> 1 </td> </tr> </tbody> </table> --- exclude: false <div id="htmlwidget-5e0e185d002af3726f66" style="width:100%;height:auto;" class="datatables html-widget"></div> <script type="application/json" data-for="htmlwidget-5e0e185d002af3726f66">{"x":{"filter":"none","vertical":false,"fillContainer":false,"data":[["Mazda RX4","Mazda RX4 Wag","Datsun 710","Hornet 4 Drive","Hornet Sportabout","Valiant"],[21,21,22.8,21.4,18.7,18.1],[6,6,4,6,8,6],[160,160,108,258,360,225],[110,110,93,110,175,105],[3.9,3.9,3.85,3.08,3.15,2.76],[2.62,2.875,2.32,3.215,3.44,3.46],[16.46,17.02,18.61,19.44,17.02,20.22],[0,0,1,1,0,1],[1,1,1,0,0,0],[4,4,4,3,3,3],[4,4,1,1,2,1]],"container":"<table class=\"display\">\n <thead>\n <tr>\n <th> <\/th>\n <th>mpg<\/th>\n <th>cyl<\/th>\n <th>disp<\/th>\n <th>hp<\/th>\n <th>drat<\/th>\n <th>wt<\/th>\n <th>qsec<\/th>\n <th>vs<\/th>\n <th>am<\/th>\n <th>gear<\/th>\n <th>carb<\/th>\n <\/tr>\n <\/thead>\n<\/table>","options":{"pageLength":4,"columnDefs":[{"className":"dt-right","targets":[1,2,3,4,5,6,7,8,9,10,11]},{"orderable":false,"targets":0}],"order":[],"autoWidth":false,"orderClasses":false,"lengthMenu":[4,10,25,50,100]}},"evals":[],"jsHooks":[]}</script> --- layout: true ## Lists --- .pull-left[ #### Here is an unordered list: * Item foo * Item bar * Item baz * Item zip ] .pull-right[ #### And an ordered list: 1. 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Item four ] --- ### And a nested list: - level 1 item - level 2 item - level 2 item - level 3 item - level 3 item - level 1 item - level 2 item - level 2 item - level 2 item - level 1 item - level 2 item - level 2 item - level 1 item --- ### Nesting an ol in ul in an ol - level 1 item (ul) 1. level 2 item (ol) 1. level 2 item (ol) - level 3 item (ul) - level 3 item (ul) - level 1 item (ul) 1. level 2 item (ol) 1. level 2 item (ol) - level 3 item (ul) - level 3 item (ul) 1. level 4 item (ol) 1. level 4 item (ol) - level 3 item (ul) - level 3 item (ul) - level 1 item (ul) --- layout: true ## Plots --- <img src="data:image/png;base64,#index_files/figure-html/plot-example-1.svg" width="100%" /> --- <img src="data:image/png;base64,#index_files/figure-html/plot-example-themed-1.svg" width="100%" /> --- layout: false ## Square image <center><img src="data:image/png;base64,#https://octodex.github.com/images/labtocat.png" height="400px" /></center> .footnote[GitHub Octocat] --- ### Wide image  .footnote[Wide images scale to 100% slide width] --- ## Two images .pull-left[  ] .pull-right[  ] --- class: animated slideInRight fadeOutLeft # remark.js You can see an introduction of remark.js from [its homepage](https://remarkjs.com). You should read the [remark.js Wiki](https://github.com/gnab/remark/wiki) at least once to know how to - create a new slide (Markdown syntax^* and slide properties); - format a slide (e.g. text alignment); - configure the slideshow; - and use the presentation (keyboard shortcuts). It is important to be familiar with remark.js before you can understand the options in **xaringan**. .footnote[[*] It is different with Pandoc's Markdown! It is limited but should be enough for presentation purposes. Come on... You do not need a slide for the Table of Contents! Well, the Markdown support in remark.js [may be improved](https://github.com/gnab/remark/issues/142) in the future.] --- class: middle center # Distribution of Scores: Population-level Interpretation <div class="figure"> <img src="data:image/png;base64,#plot_narrow.png" alt="Statistical classification of neuropsychological test scores in the general population." width="50%" /> <p class="caption">Statistical classification of neuropsychological test scores in the general population.</p> </div> --- class: middle center # Distribution of Scores: Clinical Interpretation <div class="figure"> <img src="data:image/png;base64,#plot_broad.png" alt="General clinical interpretation of performance for individual test scores and broader neuropsychological domains." width="50%" /> <p class="caption">General clinical interpretation of performance for individual test scores and broader neuropsychological domains.</p> </div> --- # Neuropsych Drilldown: z-Scores (M = 0, SD = 1) <div 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","weekdays":["Sunday","Monday","Tuesday","Wednesday","Thursday","Friday","Saturday"]}},"type":"chart","fonts":[],"debug":false},"evals":[],"jsHooks":[]}</script> <p class="caption">Drilldown neurocog Pct</p> </div> --- class: center, middle # Thanks! Slides created via the R packages: [**xaringan**](https://github.com/yihui/xaringan)<br> [gadenbuie/xaringanthemer](https://github.com/gadenbuie/xaringanthemer) The chakra comes from [remark.js](https://remarkjs.com), [**knitr**](http://yihui.name/knitr), and [R Markdown](https://rmarkdown.rstudio.com).